Protection & Derivatization

In organic synthesis, appropriate use of protecting agents is very important to a synthetic strategy.Useful protecting agents must have the following properties:
- the protecting agent must selectively react with the functional group that requires protection.
- the protective group must be introduced in high yields, without side reactions.
- the protected functional groups should be stable under various reaction conditions.
- the protective group should be capable of being selectively deprotected under specific conditions that are not adverse to the integrity of the protected compound.
A list shows a wide range of protecting agents, from conventional protective groups (TMS, Boc, trityl etc.) to a new special protecting agent, 1,2-bis(chlorodimethylsilyl)ethane (which reacts only with aliphatic primary amines to generate azadisilacyclopentane derivatives) and Teoc-NT1) developed by Sodeoka and Shimizu in 2007.
Particularly, Teoc-NT is a useful protecting agent which is stable and easy to handle. It reacts rapidly with various amines, alcohols, and thiols at room temperature to give the corresponding protected compounds in high yields, respectively. The by-product nitrotriazole (NT) has low solubility in the solvent and precipitates out as a crystalline solid. As a result, NT can be removed by simple filtration. The Teoc group can be removed easily by fluoride ions under a neutral condition. Teoc-NT is applicable to the synthesis of various base-sensitive oligonucleotide derivatives.

A2301 A2301 B0643 B0643 A2298 A2298
C0274 C0274 A1268 A1268 A2302 A2302
A2303 A2303 A2299 A2299 A0729 A0729
A0480 A0480 A1247 A1247 B2379 B2379
B1128 B1128 B1151 B1151 B0105 B0105
B3571 B3571 B3567 B3567 B0411 B0411
B0412 B0412 B2334 B2334 B3021 B3021
C0176 C0176 B1257 B1257 C1591 C1591
B3574 B3574 B1483 B1483 B3234 B3234
B1688 B1688 B1773 B1773 B1699 B1699
B3563 B3563 B1702 B1702 B0916 B0916
B0988 B0988 C1573 C1573 B1089 B1089
B1969 B1969 B1436 B1436 C0933 C0933
B3577 B3577 B0995 B0995 B3565 B3565
B1043 B1043 B2697 B2697 T1525 T1525
B1223 B1223 B3566 B3566 B2898 B2898
B1663 B1663 B3590 B3590 B1496 B1496
C1574 C1574 C1124 C1124 C1131 C1131
D2262 D2262 T2116 T2116 C1339 C1339
C0202 C0202 C2412 C2412 T0589 T0589
C0306 C0306 C2411 C2411 D2504 D2504
P1277 P1277 D2461 D2461 C1600 C1600
P1281 P1281 D1547 D1547 D3878 D3878
D3879 D3879 D3880 D3880 D2469 D2469
D3135 D3135 D1608 D1608 D2334 D2334
T1468 T1468 D0555 D0555 D0626 D0626
D1612 D1612 D2915 D2915 D1594 D1594
D2159 D2159 D0835 D0835 D1463 D1463
C1415 C1415 C0683 C0683 E0478 E0478
E0479 E0479 E0471 E0471 E0105 E0105
T0872 T0872 F0239 F0239 F0197 F0197
I0060 I0060 I0324 I0324 M0071 M0071
M0802 M0802 M0676 M0676 M2016 M2016
M0680 M0680 M0681 M0681 M1004 M1004
I0303 I0303 M1199 M1199 M0790 M0790
M0441 M0441 M0536 M0536 B1906 B1906
N0142 N0142 N0507 N0507 N0181 N0181
C1400 C1400 N0363 N0363 P1782 P1782
P1378 P1378 P1614 P1614 P0677 P0677
P0763 P0763 P1902 P1902 T1485 T1485
T0272 T0272 C0795 C0795 T1606 T1606
T1689 T1689 T0670 T0670 T1078 T1078
T1588 T1588 D2390 D2390 T1146 T1146
T2590 T2590 T2591 T2591 T2544 T2544
T0585 T0585 T1277 T1277 T1535 T1535
T1573 T1573 T0871 T0871 T1237 T1237
T1467 T1467 T1071 T1071 T1526 T1526
T0512 T0512 C0308 C0308
A2301 3-Acetylthiazolidine-2-thione
B0643 Allyl Bromide
A2298 Allyl(tert-butyl)dimethylsilane
C0274 Allyl Chloride
A1268 Allyl Chloroformate
A2302 N-(Allyloxycarbonyloxy)succinimide
A2303 Allyl Phenyl Carbonate
A2299 Allyltriethylsilane
A0729 Allyltrimethylsilane
A0480 p-Anisaldehyde
A1247 p-Anisaldehyde Dimethyl Acetal
B2379 Benzaldehyde
B1128 1,2-Benzenedisulfonyl Dichloride
B1151 1,3-Benzodithiolylium Tetrafluoroborate [Hydroxyl-Protecting Agent]
B0105 Benzoyl Chloride
B3571 3-Benzoylthiazolidine-2-thione
B3567 Benzoyl Trifluoromethanesulfonate
B0411 Benzyl Bromide (stabilized with Propylene Oxide)
B0412 Benzyl Chloride (stabilized with epsilon-Caprolactam)
B2334 Benzylchlorodimethylsilane
B3021 Benzyl Chloroformate
C0176 Benzyl Chloroformate (30-35% in Toluene)
B1257 Benzyl Isopropenyl Ether [Hydroxyl-Protecting Agent]
C1591 Benzyl 4-Nitrophenyl Carbonate
B3574 Benzyl Phenyl Carbonate
B1483 Benzyl 2,2,2-Trichloroacetimidate
B3234 Benzyl 2,2,2-Trifluoro-N-phenylacetimidate
B1688 1,2-Bis(chlorodimethylsilyl)ethane [Protecting Reagent for Primary Amines]
B1773 1,2-Bis[(dimethylamino)dimethylsilyl]ethane [Protecting Reagent for Aromatic Primary Amines]
B1699 1,2-Bis(dimethylsilyl)benzene
B3563 1,3-Bis(trimethylsilyloxy)propane
B1702 9-Bromo-9-phenylfluorene
B0916 N-tert-Butoxycarbonylimidazole
B0988 2-(tert-Butoxycarbonyloxyimino)-2-phenylacetonitrile
C1573 N-(tert-Butoxycarbonyloxy)phthalimide
B1089 2-(tert-Butoxycarbonylthio)-4,6-dimethylpyrimidine [Boc Agent for Peptides Synthesis]
B1969 1-tert-Butoxycarbonyl-1,2,4-triazole
B1436 tert-Butoxydiphenylchlorosilane (stabilized with CaCO3)
C0933 tert-Butyl Carbazate
B3577 tert-Butyl[4-(dimethoxymethyl)phenoxy]dimethylsilane
B0995 tert-Butyldimethylchlorosilane [tert-Butyldimethylsilylating Agent]
B3565 tert-Butyldimethylsilane
B1043 1-(tert-Butyldimethylsilyl)imidazole [tert-Butyldimethylsilylating Agent]
B2697 tert-Butyldimethylsilyl N-Phenylbenzimidate
T1525 tert-Butyldimethylsilyl Trifluoromethanesulfonate
B1223 tert-Butyldiphenylchlorosilane
B3566 tert-Butyldiphenylsilane
B2898 tert-Butyldiphenylsilyl Trifluoromethanesulfonate
B1663 tert-Butylmethoxyphenylsilyl Bromide
B3590 tert-Butyl Phenyl Carbonate
B1496 tert-Butyl 2,2,2-Trichloroacetimidate
C1574 tert-Butyl 2,4,5-Trichlorophenyl Carbonate
C1124 N-Carbobenzoxyoxysuccinimide
C1131 N-(2-Chlorobenzyloxycarbonyloxy)succinimide
D2262 Chlorodiethylisopropylsilane
T2116 Chloro(dimethyl)thexylsilane
C1339 2-(Chloromethoxy)ethyltrimethylsilane (stabilized with Diisopropylethylamine)
C0202 Chloromethyl Methyl Ether
C2412 Chloromethyl 2,2,2-Trichloroethyl Ether
T0589 Chlorotriethylsilane
C0306 Chlorotrimethylsilane
C2411 Chlorotris(trimethylsilyl)silane
D2504 2-Chlorotrityl Chloride
P1277 Diallyl Dicarbonate
D2461 Dibenzosuberyl Chloride
C1600 Dibenzyl Carbonate
P1281 Dibenzyl Dicarbonate
D1547 Di-tert-butyl Dicarbonate [Boc-reagent for Amino Acid]
D3878 Di-tert-butyl Dicarbonate (ca. 30% in Dioxane)
D3879 Di-tert-butyl Dicarbonate (ca. 30% in Tetrahydrofuran)
D3880 Di-tert-butyl Dicarbonate (ca. 30% in Toluene)
D2469 Di-tert-butyldichlorosilane
D3135 Di-tert-butylsilyl Bis(trifluoromethanesulfonate)
D1608 1,3-Dichloro-1,1,3,3-tetraisopropyldisiloxane [Hydroxyl Protecting Agent]
D2334 1,3-Dichloro-1,1,3,3-tetramethyldisiloxane
T1468 Diethylisopropylsilyl Trifluoromethanesulfonate
D0555 3,4-Dihydro-2H-pyran
D0626 2,4-Dimethoxybenzaldehyde
D1612 4,4'-Dimethoxytrityl Chloride [Hydroxyl Protecting Agent]
D2915 4-(Dimethylamino)-1-(triphenylmethyl)pyridinium Chloride
D1594 Dimethylisopropylchlorosilane [Dimethylisopropylsilylating Agent]
D2159 Dimethylthiophosphinoyl Chloride
D0835 2,4-Dinitrofluorobenzene
D1463 2,4-Dinitrophenylsulfenyl Chloride
C1415 Diphenylphosphinic Chloride
C0683 N-Ethoxycarbonylphthalimide [for Peptide Synthesis]
E0478 Ethylenedioxybis(trimethylsilane) [Protecting Reagent for Aldehydes and Ketones]
E0479 Ethylenedithiobis(trimethylsilane) [Protecting Reagent for Aldehydes and Ketones]
E0471 Ethylene Di(thiotosylate) [Protecting Reagent for Active Methylene]
E0105 Ethylene Glycol
T0872 S-Ethyl Trifluorothioacetate [Trifluoroacetylating Agent for Peptides Research]
F0239 N-[(9H-Fluoren-9-ylmethoxy)carbonyloxy]succinimide
F0197 9-Fluorenylmethyl Chloroformate [N-Protecting Agent for Peptides Research]
I0060 Iodomethane (stabilized with Copper chip)
I0324 Isopropenyloxytrimethylsilane [Trimethylsilylating Agent]
M0071 2-Mesitylenesulfonyl Chloride
M0802 4-Methoxybenzenesulfonyl Chloride
M0676 4-Methoxybenzyl Chloride (stabilized with Amylene)
M2016 4-Methoxybenzyl 2,2,2-Trichloroacetimidate
M0680 2-Methoxyethoxymethyl Chloride
M0681 (2-Methoxyethoxymethyl)triethylammonium Chloride
M1004 4'-Methoxyphenacyl Bromide
I0303 2-Methoxypropene
M1199 1-Methoxy-1-trimethylsilyloxypropene
M0790 4-Methoxytrityl Chloride [Hydroxyl Protecting Agent]
M0441 4-(Methylthio)phenol
M0536 N-Methyl-N-trimethylsilylacetamide [Trimethylsilylating Agent]
B1906 N,O-Bis(tert-butyldimethylsilyl)acetamide [tert-Butyldimethylsilylating Agent]
N0142 2-Nitrobenzenesulfonyl Chloride
N0507 4-Nitrobenzenesulfonyl Fluoride
N0181 4-Nitrobenzyl Bromide
C1400 4-Nitrophenyl Chloroformate
N0363 2-Nitrophenylsulfenyl Chloride [N-Protecting Agent for Peptides Research]
P1782 Phenacyl Bromide
P1378 (Phenylthio)trimethylsilane
P1614 Phthalic Anhydride
P0677 Pivaloyl Chloride
P0763 1,3-Propanedithiol
P1902 2-(1H-Pyrazol-5-yl)aniline
T1485 p-Toluenesulfonic Anhydride
T0272 p-Toluenesulfonyl Chloride
C0795 2,2,2-Trichloroethyl Chloroformate
T1606 Triethyloxonium Tetrafluoroborate (15% in Dichloromethane, ca. 1mol/L) [Ethylating Reagent]
T1689 Triethylsilyl Trifluoromethanesulfonate
T0670 1-(Trifluoroacetyl)imidazole
T1078 Triisopropylsilyl Chloride
T1588 Triisopropylsilyl Trifluoromethanesulfonate
D2390 Trimethylene Di(thiotosylate) [Protecting Reagent for Active Methylene]
T1146 Trimethylsilyldiazomethane (ca. 10% in Hexane, ca. 0.6mol/L)
T2590 1-[2-(Trimethylsilyl)ethoxycarbonyloxy]benzotriazole
T2591 N-[2-(Trimethylsilyl)ethoxycarbonyloxy]succinimide
T2544 2-(Trimethylsilyl)ethyl 3-Nitro-1H-1,2,4-triazole-1-carboxylate
T0585 N-Trimethylsilylimidazole [Trimethylsilylating Reagent]
T1277 N-(Trimethylsilyl)morpholine
T1535 3-Trimethylsilyl-2-oxazolidinone [Trimethylsilylating Reagent]
T1573 4-Trimethylsilyloxy-3-penten-2-one
T0871 Trimethylsilyl Trifluoromethanesulfonate [Trimethylsilylating Agent]
T1237 Triphenylmethanesulfenyl Chloride
T1467 Triphosgene
T1071 4,4',4''-Tris(benzoyloxy)trityl Bromide [Hydroxyl Protecting Agent]
T1526 4,4',4''-Tris(4,5-dichlorophthalimido)trityl Bromide [Protecting Reagent for Primary Alcohol]
T0512 Trityl Bromide
C0308 Trityl Chloride

Literature

1) M. Shimizu, M. Sodeoka, Org. Lett., 2007, 9, 5231 [DOI].
2) Review: Protective Groups in Organic Synthesis. 3rd ed., ed. by T. W. Greene, P. G. M. Wuts, John Wiley & Sons, Inc., New York, 1999.


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